GSTR-9C Reconciliation Statement, Prepared & Filed by Experts
CA-managed GSTR-9C — we map your audited books to the GSTR-9 annual return, prepare the Part-A reconciliation and Part-B tables, resolve mismatches, and help you self-certify and file by 31 December. 100% online, with a clear fee quoted upfront and zero hidden charges.
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What Is GSTR-9C Reconciliation?
A quick, plain-language explanation before the details.
GSTR-9C is the reconciliation statement that ties your audited annual financial statements to the figures declared in the GSTR-9 annual return — reconciling turnover, taxable value, tax paid and ITC.
Under Section 44 of the CGST Act, 2017 read with Rule 80 of the CGST Rules, every registered person whose aggregate turnover during a financial year exceeds ₹5 crore must furnish a self-certified reconciliation statement in Form GSTR-9C along with the annual return in Form GSTR-9.
Filed on the GST portal (gst.gov.in) administered by the Goods and Services Tax Network (GSTN) under the Central Board of Indirect Taxes and Customs (CBIC).
GSTR-9C is an annual filing — a fresh statement is prepared and filed for each financial year in which the turnover threshold is crossed.
Quick Facts
Is This Service Right for You?
Ideal for
- Registered persons with aggregate turnover above ₹5 crore in the FY
- Companies & LLPs with audited financial statements above the threshold
- Manufacturers & traders reconciling large turnover, tax and ITC volumes
- Multi-state businesses filing a separate GSTR-9C for each qualifying GSTIN
- Exporters & importers reconciling zero-rated supplies and IGST on imports
- Large service providers, agencies and platforms crossing ₹5 crore
You may need this if
- Your aggregate turnover has crossed ₹5 crore during the financial year
- You have filed (or are filing) your GSTR-9 annual return
- Your audited books do not exactly match the figures declared in GSTR-9
- You need turnover, tax paid and ITC reconciled before self-certifying
- You want unreconciled differences explained and any extra tax paid via DRC-03
- You want GSTR-9 and GSTR-9C prepared and filed together, on time
Not sure if you need this?
Talk to an Expert →Why Is GSTR-9C Reconciliation Important?
GSTR-9C ties your audited accounts to your GST returns and is self-certified by you — so accurate reconciliation protects you from demands and notices. Here is why it matters.
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01
Statutory Requirement
Mandatory under Section 44 & Rule 80 for every registered person with aggregate turnover above ₹5 crore in the financial year.
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02
Books Match Returns
Reconciles audited turnover, taxable value and tax paid with the GSTR-9 figures — one clean, consistent number the department can rely on.
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03
Fewer Scrutiny Notices
A well-explained reconciliation reduces the risk of ASMT-10 scrutiny and departmental turnover or ITC queries.
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04
ITC Validated
Confirms ITC availed matches GSTR-2B and the books, so ineligible or excess credit is spotted before it becomes a demand with interest.
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05
Confident Self-Certification
Since FY 2020–21 the taxpayer self-certifies — a CA-reviewed statement means you certify accurate, defensible figures.
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06
Filed With GSTR-9
GSTR-9C cannot be filed without GSTR-9 — we prepare and file both together on the portal by 31 December, with no office visits.
Simple, Transparent Pricing
Custom quote for your case
Fees depend on your business type and scope. Get a clear, itemised quote upfront — no hidden professional charges, government fee billed at actuals.
Who Can Apply?
Eligibility checklist
- Aggregate turnover during the financial year exceeds ₹5 crore (PAN-level, all GSTINs)
- The GSTR-9 annual return for the year has been (or is being) filed
- Audited annual financial statements / trial balance are available
- GSTR-1, GSTR-3B and GSTR-2B data for the year is accessible
- An authorised signatory who can e-verify and self-certify the statement
- A separate GSTR-9C is prepared for each GSTIN that crosses the threshold
Everything You Need. One Professional Team.
Eligibility Check
Confirm aggregate turnover crosses ₹5 crore for the FY and that GSTR-9C applies to each GSTIN.
Document Collection
Gather audited financials, GSTR-9, GSTR-3B/2B and the trial balance securely online.
Turnover Reconciliation
Map audited turnover to the turnover declared in GSTR-9 and explain every difference (Tables 5–8).
Tax Paid Reconciliation
Reconcile rate-wise tax payable on reconciled turnover with tax actually paid (Tables 9–11).
ITC Reconciliation
Match ITC availed in returns with ITC in the books and expense heads (Tables 12–14).
Part-A & Part-B
Prepare the reconciliation tables and the recommendation on any additional tax payable.
Self-Certification Support
Walk you through certifying the statement and reporting any DRC-03 payments.
Portal Filing & Delivery
File GSTR-9C together with GSTR-9 and hand over the filed acknowledgement.
What You’ll Receive
What Documents Are Required for GSTR-9C?
Requirements are grouped into financial records, GST returns and registration/access details. Keep clear scans (PDF/JPG) ready — everything is collected securely over WhatsApp or email with zero office visits.
Financial Records
Audited accounts & books- Audited annual financial statements (P&L and balance sheet)
- Trial balance for the financial year
- Statement of turnover reconciled with the books
- Details of any additional tax paid via DRC-03
GST Returns
Filed returns for the year- GSTR-9 annual return for the financial year
- Monthly / quarterly GSTR-1 and GSTR-3B
- GSTR-2B for ITC reconciliation
- Rate-wise summary of tax paid (IGST, CGST, SGST, cess)
Registration & Access
Portal & signatory details- GST registration certificate (REG-06) / GSTIN
- GST portal login credentials
- Authorised signatory details for self-certification
- DSC or Aadhaar-linked mobile for e-verification
File with GSTR-9 by 31 December
GSTR-9C is filed together with the GSTR-9 annual return by 31 December of the following financial year, and cannot be filed before GSTR-9.
Audited accounts are the base
The reconciliation starts from your audited financial statements and trial balance — keep these finalised before we begin so turnover and ITC can be mapped accurately.
Reconcile ITC before certifying
ITC availed must be reconciled against GSTR-2B and the books; excess or ineligible credit should be identified and, where needed, reversed before self-certification.
You self-certify since FY 2020–21
No CA/CMA audit certification is required — the taxpayer self-certifies. We prepare and review the statement so you certify accurate figures with confidence.
Don’t have all the documents?
We’ll identify what your case needs →How GSTR-9C Reconciliation Works (Step by Step)
The entire process is 100% online — documents are collected over WhatsApp or email and the statement is filed on gst.gov.in.
Eligibility check
Confirm aggregate turnover crosses ₹5 crore for the FY and that GSTR-9C applies to each qualifying GSTIN.
Document collection
Collect audited financials, GSTR-9, GSTR-3B/2B and the trial balance securely online.
Reconciliation
Reconcile turnover, taxable value, tax paid and ITC against the figures declared in GSTR-9.
Part-A & Part-B prepared
Draft the reconciliation tables, explain every difference, and note any additional tax payable.
DRC-03 & review
Where differences require it, pay additional tax via DRC-03 and review the whole statement with you.
Self-certify & file
You self-certify; GSTR-9C is filed with GSTR-9 on the portal and the acknowledgement is delivered.
How Long Does GSTR-9C Reconciliation Take?
| Stage | Expected Time |
|---|---|
| Eligibility check + document collection | Day 1–3 |
| Turnover, tax & ITC reconciliation | Day 3–5 |
| Part-A & Part-B, self-certification & filing | Day 5–6 · by 31 December |
Timelines depend on how quickly audited financials, GSTR-9 and returns data are shared, and on the volume of reconciling differences. GSTR-9C is filed together with GSTR-9 by 31 December of the following financial year — we start early so both are filed on time.
Key Dates — At a Glance
| Frequency | What Is Due |
|---|---|
| Annually | GSTR-9 annual return by 31 December (turnover above ₹2 crore) · GSTR-9C reconciliation by 31 December (turnover above ₹5 crore) · File GSTR-9 and GSTR-9C together on the portal |
| Before Filing | Finalise audited financial statements & trial balance · Reconcile ITC against GSTR-2B and the books · Pay any additional tax on differences via DRC-03 |
| Ongoing | Reconcile GSTR-3B vs GSTR-1 vs 2B through the year · Keep expense-head ITC mapped to the books · Track CBIC notifications on annual-return changes |
| Time Limit | Annual returns cannot be filed after three years from the due date · Regularise old GSTR-9 / 9C years before they lock · Retain reconciliation working papers for the record |
Dates are indicative and may change with government notifications. Our team tracks every deadline so you never miss a filing.
Doing It Yourself vs TaxClue
Doing It Yourself
- Interpret Section 44 & Rule 80 and the ₹5 crore threshold yourself
- Map audited turnover to GSTR-9 turnover (Tables 5–8)
- Reconcile rate-wise tax payable with tax paid (Tables 9–11)
- Match ITC availed against GSTR-2B and the books (Tables 12–14)
- Explain every unreconciled difference with reasons
- Decide and pay any additional tax via DRC-03
- Risk scrutiny notices from an unexplained gap
With TaxClue
- Threshold and applicability confirmed for each GSTIN
- Audited turnover mapped to GSTR-9, every difference explained
- Tax paid vs tax payable reconciled rate-wise
- ITC reconciled against GSTR-2B and the books
- Part-A and Part-B prepared and reviewed before filing
- DRC-03 handled where additional tax is payable
- Self-certified and filed with GSTR-9, on time
Skip the guesswork.
Let an expert handle it →Common Mistakes That Delay Your Application
TaxClue reviews your documents before filing to reduce avoidable errors.
What Compliance Applies Around GSTR-9C?
Annually
- GSTR-9 annual return by 31 December (turnover above ₹2 crore)
- GSTR-9C reconciliation by 31 December (turnover above ₹5 crore)
- File GSTR-9 and GSTR-9C together on the portal
Before Filing
- Finalise audited financial statements & trial balance
- Reconcile ITC against GSTR-2B and the books
- Pay any additional tax on differences via DRC-03
Ongoing
- Reconcile GSTR-3B vs GSTR-1 vs 2B through the year
- Keep expense-head ITC mapped to the books
- Track CBIC notifications on annual-return changes
Time Limit
- Annual returns cannot be filed after three years from the due date
- Regularise old GSTR-9 / 9C years before they lock
- Retain reconciliation working papers for the record
Penalties & Consequences
What is at stake if you do not comply
- Unexplained turnover or ITC differences between books and GSTR-9 invite ASMT-10 scrutiny notices
- Excess or ineligible ITC not reversed becomes a demand with 18% interest under Section 50
- Missing the 31 December deadline attracts a ₹200-per-day late fee plus interest on short-paid tax
- GSTR-9C once filed cannot be revised, so any self-certified error stays on record
- Annual returns cannot be filed after three years from the due date, locking old years
Regulatory Updates 2025–26
- 2025: GSTR-9 annual return remains optional for turnover up to ₹2 crore; GSTR-9C self-certified reconciliation applies above ₹5 crore.
Why Businesses Choose TaxClue
CA / CS Team
Qualified Chartered Accountants and Company Secretaries with deep GST domain expertise.
End-to-End
From eligibility check to the filed acknowledgement — fully managed, minimal effort from you.
Fast Turnaround
Committed timelines with proactive status updates, so both GSTR-9 and 9C are filed on time.
100% Online
Everything over WhatsApp / email — no office visits required.
Transparent Fees
A clear fee quoted upfront — ₹0 hidden professional charges.
Post-Filing Support
Guidance continues after filing, including on any DRC-03 or follow-up queries.
Your Documents Deserve Professional Care
- Documents handled by professionals under confidentiality
- Access limited to the team working on your file
- Communication over secure digital channels
- Documents retained only as long as needed for compliance
Frequently Asked Questions
What is GSTR-9C?
Who is required to file GSTR-9C?
What is the due date for GSTR-9C?
Does a CA or CMA need to certify GSTR-9C?
What does GSTR-9C reconcile?
What is the difference between GSTR-9 and GSTR-9C?
What is the turnover threshold for GSTR-9C?
What if there is an unreconciled difference in GSTR-9C?
What is DRC-03 in the context of GSTR-9C?
Is there a late fee for filing GSTR-9C after 31 December?
Can GSTR-9C still be filed for old financial years?
How does TaxClue prepare GSTR-9C?
Is GSTR-9C mandatory for turnover below ₹5 crore?
How is aggregate turnover calculated for the GSTR-9C threshold?
What is the penalty for not filing GSTR-9C?
How do I reconcile ITC in GSTR-9C against the books?
Can GSTR-9C be revised after filing?
Official Sources & Legal References
Every regulatory figure on this page — the threshold, due date, sections and rules — is drawn from primary law and official government sources. Verify them directly:
- GST Portal — Annual Return & GSTR-9COfficial portal to file GSTR-9 and GSTR-9C and download acknowledgements
- CGST Act, 2017 — Section 44Annual return and reconciliation statement · India Code
- CBIC-GST — Rules & Form GSTR-9CRule 80 of the CGST Rules and the format of Form GSTR-9C
- ICAI IDTC — GST technical guidanceProfessional guidance on the annual return and reconciliation
Related Guides
Section 44: GSTR-9 Annual Return
Read guide ArticleGSTR-1 vs GSTR-3B Reconciliation
Read guide ArticleHow ITC Matching in GSTR-2B Works
Read guide ArticleSection 17: Blocked ITC
Read guide ArticleSection 15: Value of Supply
Read guide ArticleSection 59–64: Assessment
Read guide ArticleGST Payment via PMT-06 Challan
Read guideGSTR-9C Reconciliation Resources — All Free
Get Your GSTR-9C Reconciled & Filed by 31 December
Expert-managed GSTR-9C — books mapped to GSTR-9, turnover, tax and ITC reconciled, differences explained, and filing with GSTR-9 handled end to end. Consultation, clear fee quoted upfront, zero hidden charges.
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